species:   Artha
pid:       MI0005441
parent:    ath-MIR864
paralog:   
locus:     1:6740500-6740591
matures:   ['UCAGGUAUGAUUGACUUCAAA', 'UAAAGUCAAUAAUACCUUGAAG']
srr:       SRR9216049
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216049.cram 1:6740500-6740591

0 out of bounds
11 alignments
11 proper strand
10 stranded perfect matches

 ***********************                                           ************************ 
GCUUCAGGUAUGAUUGACUUCAAAAAAUACCUUGAAACUAUAAACCUCAGUUUCUUUGAAUUUGAUUUUUAAAGUCAAUAAUACCUUGAAGC
(((((((((((.((((((((.(((((.......((((((.........))))))...........))))).)))))))).))))).))))))
---UCAGGUAUGAUUGACUUCAAA-------------------------------------------------------------------- l=21 a=3 c
---------------------------------------------------------------------UAAAGUCAAUAAUACCUUGAAG- l=22 a=1 c*
---UCAGGUAUGAUUGACUUCAAA-------------------------------------------------------------------- l=21 a=3 ma
---------------------------------------------------------------------UAAAGUCAAUAAUACCUUGAAG- l=22 a=1 ma*

--UaCAGGUAUGAUUGACUUC----------------------------------------------------------------------- l=19 a=1 
---UCAGGUAUGAUUGACUUC----------------------------------------------------------------------- l=18 a=1 
---UCAGGUAUGAUUGACUUCA---------------------------------------------------------------------- l=19 a=1 
---UCAGGUAUGAUUGACUUCAAA-------------------------------------------------------------------- l=21 a=3 (c,ma)
----CAGGUAUGAUUGACUUCA---------------------------------------------------------------------- l=18 a=3 
--------------------------------------------------------------------UUAAAGUCAAUAAUACCUUGAA-- l=22 a=1 
---------------------------------------------------------------------UAAAGUCAAUAAUACCUUGAAG- l=22 a=1 (c*,ma*)

mb-01111
ax-1111011
ku-01
ss-101111111101
fn-011
